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Birdseed

eagle-i ID

http://harvard.eagle-i.net/i/0000013a-6b0b-ab8c-5088-2eef80000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "Birdseed is SNP genotyping algorithm that runs on the Affymetrix 500K, SNP5.0, and SNP6.0 platforms. Although Affymetrix officially supports Birdseed only for SNP6.0, we and others have found that it has excellent performance on the 500K and SNP5.0 platforms as well."
  2. Manufacturer
    Broad Institute
  3. Used by
    Broad Institute
  4. Operating System
    LINUX
  5. Operating System
    Mac OSX
  6. Operating System
    Microsoft Windows
  7. Operating System
    UNIX
  8. Data Input
    SNP Genome sequence analysis (Affy 500K, 5.0, 6.0)
  9. Data Output
    Single Nucleotide Polymorphism (SNP) genotype calls
  10. Software purpose
    Sequence comparison objective
  11. Related Publication or Documentation
    Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
  12. Website(s)
    https://www.broadinstitute.org/birdsuite/birdsuite-overview
  13. Related Technique
    SNP genotyping assay
  14. Algorithm used
    Expectation-Maximization(EM) algorithm
  15. Coded in
    Java
 
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Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016