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ALLPATHS-LG

eagle-i ID

http://harvard.eagle-i.net/i/0000013a-6a9e-0b50-5088-2eef80000000

Resource Type

  1. Algorithmic software component

Properties

  1. Resource Description
    "(ALLPATHS-LG) works on both small and large (mammalian size) genomes. To use it, you should first generate ~100 base Illumina reads from two libraries: one from ~180 bp fragments, and one from ~3000 bp fragments, both at about 45x coverage. Sequence from longer fragments will enable longer-range continuity."
  2. Contact
    CRDHELP
  3. Manufacturer
    Broad Institute
  4. Used by
    Broad Institute
  5. Version
    LG
  6. Operating System
    Linux
  7. Operating System
    Unix
  8. Data Input
    Short Genomic DNA sequences
  9. Data Output
    Assembled Genome sequence
  10. Data Output
    Genome Assembly Graph
  11. Software purpose
    Sequence alignment objective
  12. Related Publication or Documentation
    High-quality draft assemblies of mammalian genomes from massively parallel sequence data
  13. Related Publication or Documentation
    ALLPATHS‐LG Manual 
  14. Website(s)
    ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/
  15. Related Technique
    Genome assembly
  16. Coded in
    Java
 
RDFRDF
 
Provenance Metadata About This Resource Record

Copyright © 2016 by the President and Fellows of Harvard College
The eagle-i Consortium is supported by NIH Grant #5U24RR029825-02 / Copyright 2016